Ravi Palanivelu Lab: Publications

Palanivelu lab:

Find a complete list of our lab's publications also in PubMed, Google Scholar, and ResearchGate.

36. Hanyang Cai, Liu, L, Zhang, M., Chai, M., Huang, Y., Chen F., Yan M., Su Z, Henderson, I., Palanivelu, R., Chen X., and Qin Y. (2021) Spatiotemporal control of miR398 biogenesis via chromatin remodeling and kinase signaling ensures proper ovule development. Plant Cell (in press) doi: 10.1093/plcell/koab056. PubMed ID: 33570655. Link to the article.

35. Desnoyer N, Palanivelu R. (2020). Bridging the GAPs in plant reproduction: a comparison of plant and animal GPI-anchored proteins. Plant Reprod. https://doi.org/10.1007/s00497-020-00395-9. PubMed ID: 32945906. Link to the article.

34. Desnoyer N, Howard G, Jong E, Palanivelu R. (2020). AtPIG-S, a predicted Glycosylphosphatidylinositol Transamidase subunit, is critical for pollen tube growth in Arabidopsis. BMC Plant Biol. 20 (1):380. https://doi.org/10.1186/s12870-020-02587-x. PubMed ID: 32811442 Noble JA, Palanivelu R. (2020). Link to the article.

33. Workflow to Characterize Mutants with Reproductive Defects. Methods Mol Biol. 2160:109-128. DOI: 10.1007/978-1-0716-0672-8_8. PubMed ID: 32529432. Link to the article.

32. Johnson M.A., Harper J.F., Palanivelu, R. (2019). A Fruitful Journey: Pollen Tube Navigation from Germination to Fertilization. Annu Rev Plant Biol. 70:809–37. doi.org/10.1146/annurev-arplant-050718-100133. Link to the article.

31. Jones DS, Liu X, Willoughby AC, Smith BE, Palanivelu R, Kessler SA. (2018). Cellular distribution of secretory pathway markers in the haploid synergid cells of Arabidopsis thaliana. Plant J doi: 10.1111/tpj.13848. Link to the article.

30. Zhao, L., Ca, H., Su, Z., Wang, L., Zhang, M., Chen, P., Dai, X., Zhao, H., Palanivelu, R., Chen, X., and Qin, Y. (2018). KLU suppresses megasporocyte cell fate through SWR1-meidated activation of WRKY28 expression in Arabidopsis. PNAS 115(3):E526-E535. doi: 10.1073/pnas.1716054115. Link to the article .

29. Wang, Y., Tsukamoto, T., Noble, J.A., Liu, X., Mosher, R.A., and Palanivelu, R. (2017). Arabidopsis LORELEI, a Maternally-expressed Imprinted Gene, Promotes Early Seed Development. Plant Physiology 175 (2): 775-783. Link to the article or download the pdf file.

28. Zhao, D., Chong,K., and Palanivelu, R. (2017). Editorial: Molecular and Cellular Plant Reproduction. Frontiers in Plant Science 8: 199. https://doi.org/10.3389/fpls.2017.00199

27. Liu, X., Castro, C., Wang, Y., Noble, J., Ponvert, N., Bundy, M., Hoel, C., Shpak, E., and Palanivelu, R. (2016). The Role of LORELEI in Pollen Tube Reception at the Interface of the Synergid Cell and Pollen Tube Requires the Modified Eight-Cysteine Motif and the Receptor-Like Kinase FERONIA. Plant Cell. Link to the article or download the pdf file.

*An illustration about the content of this paper was used as the cover of The Plant Cell May 2016 issue, in which this research article was published.

*This paper was profiled in "In Brief" section in the Plant Cell. “Sticking the Landing: Probing the Roles of LORELEI in Pollen Tube Reception” by Jennifer Lockhart. Plant Cell. Link to the article.

*The first author of this paper, Dr. Xunliang Liu, was also highlighted with a profile. Link to the profile page.

26. Leydon, A. R., Tsukamoto, T., Dunatunga, D., Qin, Y., Johnson, M. A., and Palanivelu, R. (2015). Pollen tube discharge completes the process of synergid degeneration that is initiated by pollen tube – synergid interaction in Arabidopsis. Plant Physiology 169: 485-496. Link to the article or download the pdf file.

25. Qin, Y., Yadegari, R., and Palanivelu, R. (2015). ACTIN-RELATED PROTEIN 6 regulates DISRUPTED MEIOTIC cDNA 1 gene expression in Arabidposis thaliana ovules. Molecular Reproduction and Development. 82 (7-8): 499. Link to the article.

24. Guang-Hui Yu, G-H., Zou, J., Feng, J., Peng, X-B., Wu, J-Y., Wu, Y-L., Palanivelu, R., and Sun, M-X. (2014). Exogenous γ-aminobutyric acid affects pollen tube growth via modulating putative Ca2+-permeable membrane channels and is coupled to negative regulation on glutamate decarboxylase. J. Exp. Bot. 65 (12): 3235-48. doi: 10.1093/jxb/eru171. Link to the article or download the pdf file.

23. Qin, Y.Q., Zhao, L., Skaggs, M.I., Andreuzza S., Tsukamoto, T., Panoli, A., Wallace, K.N., Smith, S., Siddiqi, I., Yang, Z., Yadegari, Z., and Palanivelu, R. (2014). ACTIN-RELATED PROTEIN 6 Regulates Female Meiosis By Modulating Meiotic Gene Expression in Arabidopsis. Plant Cell 26 (4): 1612-1628. Link to the article or download the pdf file . This article was also recommended by Faculty of 1000 .

22. Cheung, A. Y., Palanivelu, R., Tang, W-H., Xue, H-W., and Yang, W-C. (2013). Pollen and Plant Reproduction Biology: Blooming from East to West. Mol. Plant 6 (4): 995-997. Link to the article or download the pdf file.

21. Leydon, A.R., Beale, K,.M., Woroniecka, K., Castner, E., Chen, J., Horgan, C., Palanivelu, R., and Johnson, M.A. (2013). Three MYB Transcription Factors Control Pollen Tube Differentiation Required for Sperm Release. Curr. Biol. 23 (13): 1209-1214. Link to the article.

20. Veerappan. V., Wang, J., Kang, M., Lee, J., Tang, Y., Jha, A.K., Shi, H., Palanivelu, R., and Allen, R.D. (2012). A novel HSI2 mutation in Arabidopsis affects the PHD-like domain and leads to derepression of seed-specific gene expression. Planta. 236(1):1-17. Link to the article.

*An illustration from this paper was used as the cover of the July 2012 issue in which this research article was published.

19. Palanivelu, R., and Tsukamoto, T. (2012). Pathfinding in angiosperm reproduction: pollen tube guidance by pistils ensures successful double fertilization. WIREs Dev Biol. 1:96-113. Link to the article or download the pdf file.

18. Palanivelu, R. (2011). Targeted growth of pollen tubes to ovules prior to completing fertilization. Molecular Reproduction and Development. 78 (12): 893. Link to the article or download the pdf file.

17. Qin, Y., Wysocki, R.Y., Somogyi, A., Feinstein, Y., Franco, J.Y., Tsukamoto, T., Dunatunga, D., Levy, C., Smith, S., Simpson, R., Gang, D., Johnson, M.A., and Palanivelu, R. (2011). Sulfinylated Azadecalins act as functional mimics of a pollen germination stimulant in Arabidopsis pistils. Plant Journal. 68 (5): 800-815. Link to the article or the PubMed citation or download the pdf file.

16. Brau, E., Barnard, K., Palanivelu, R., Dunatunga, D., Tsukamoto, T., and Lee, P. (2011). A generative statistical model for tracking multiple smooth tragectories. Proceedings of the IEEE Computer Vision and Pattern Recognition. 1137-1144. doi:10.1109/CVPR.2011.5995736. Download the pdf file.

15. Yetisen, A.K., Jiang, L., Cooper, J.R., Qin, Y., Palanivelu, R*., and Zohar, Y*. (2011). A microsystem-based assay for studying pollen tube guidance in plant reproduction. Journal of Micromechanics and Microengineering. 21 (5): 054018. Link to the article or download the pdf file. (*co-corresponding authors).

*This article was highlighted in the editorial by the special Journal of Micromechanics and Microengineering issue editors: MEMS in biology and Medicine, Beth L Pruitt and Amy E Herr (2011). Journal Micromechanics and Microengineering. 21 (5): 050201. Link to the editorial or download the pdf file.

14. Tsukamoto, T., and Palanivelu, R. (2010). Loss of LORELEI function in the pistil delays initiation but does not affect embryo development in Arabidopsis thaliana. Plant Signaling Behavior. 5(11): 1487-1490. Link to the article or the PubMed citation. Download the pdf file .

13. Palanivelu, R., and Johnson, M.A. (2010). Functional genomics of pollen tube-pistil interactions in Arabidopsis. Biochemical Society Transactions. 38 (2): 593–597. Link to the article or the PubMed citation. Download the pdf file .

12. Tsukamoto, T., Qin Y., Huang, Y., Dunatunga, D. and Palanivelu, R. (2010). A role for LORELEI, a putative glycosylphosphatidylinositol-anchored protein, in Arabidopsis thaliana double fertilization and early seed development. Plant Journal. 62 (4): 571-588 . Link to the article or the PubMed citation. Download the pdf file .

11. Qin Y., Leydon A. R.,, Manziello A., Pandey R., Mount D., Denic S., Vasic B., Johnson M. A. and Palanivelu, R. (2009). Penetration of the Stigma and Style Elicits a Novel Transcriptome in Pollen Tubes, Pointing to Genes Critical for Growth in a Pistil. PLoS Genetics. 5(8): e1000621. Link to the article or download the pdf file.

*An illustration from this study was used as the featured image (cover art) of the issue in which this article was published. (Link to cover art)

10. Denic, S.Z., Vasic, B., Charalambous, C.D. and Palanivelu, R. (2009). Robust control of uncertain context-sensitive probabilistic Boolean networks. IET Systems Biology. 3 (4): 279-295. Link to the article or the PubMed citation.

9. Geitmann, A. and Palanivelu, R. (2007). Fertilization requires communication: Signal generation and perception during pollen tube guidance. Floriculture and Ornamental Biotechnology. 1(2): 77-89. Download the pdf file.

8. Nikolova, N*., Palanivelu, R*., King, E., Copenhaver, G., and Drews, G. N. (2007). Synergid cell death in Arabidopsis is triggered following direct interaction with the pollen tube. Plant Physiology. 144: 1753-1762. Link to the article or download the pdf file. (* equally contributing authors)

* This paper was highlighted in the "on the inside" section of Plant Physiology. Peter V. Minorsky (2007), Plant Physiology. 144: 1691-1692. Link to the article.

Post-doctoral work:

7. Bashir, M. E. H., Lui, J. H., Palanivelu, R., Naclerio, R. M., and Preuss, D. Pollen Lipidomics: Lipid Profiling Exposes a Notable Diversity in 22 Allergenic Pollen and Potential Biomarkers of the Allergic Immune Response. (2013). PLoS ONE 8(2): e57566. Link to article or PubMed citation.

6. Renault H, El Amrani A, Palanivelu R, Updegraff EP, Yu A, Renou JP, Preuss D, Bouchereau A, Deleu C. (2011). GABA Accumulation Causes Cell Elongation Defects and Decrease in Expression of Genes Encoding Secreted and Cell Wall-related Proteins in Arabidopsis thaliana. Plant Cell Physiology. 52(5): 894-908. Link to article or PubMed citation.

5. Palanivelu, R. and Preuss, D. (2006). Distinct short-range ovule signals attract or repel Arabidopsis thaliana pollen tubes in vitro. BMC Plant Biology. 6:7. Link to the article or download the pdf file.

*Based on download statistics, BMC Plant Biology journal permanently designated this research article as a “highly accessed” journal article.

4. Palanivelu, R., Brass, L., Edlund, A. and Preuss, D. (2003). Pollen tube growth and guidance is regulated by POP2, an Arabidopsis gene that controls GABA levels. Cell. 114: 47-59. Link to the article.

*This paper was profiled in Developmental Cell’s preview section. “GABA, a New Player in the Plant Mating Game” by Zhenbiao Yang. Developmental Cell. 5: 185-6. Link to the article.

*This paper was highlighted in Nature Cell Biology’s News and Views section. “Tip of the POP2” by Donald McDonald. Nature Cell Biology. 5 (9): 778.

*This paper was profiled in Current Biology’s Dispatch section. “Plant Reproduction: GABA gradient, guidance and growth” by Hong Ma. Current Biology. 13 (21): R834-R836. Link to the article.

3. Palanivelu, R and Preuss, D. (2000). Pollen tube targeting and axon guidance: parallels in tip growth mechanisms. Trends in Cell Biology. 10: 517-524. Link to the article.

*An illustration from this paper was used as the cover of the issue.

Graduate work:

2. Palanivelu, R., Belostotsky, D. A. and Meagher, R. B. (2000). Conserved expression of Arabidopsis poly (A) binding protein 2 (PAB2) in distinct vegetative and reproductive tissues. Plant Journal . 22: 199-210. Link to the article.

1. Palanivelu, R., Belostotsky, D. A. and Meagher, R. B. (2000). Arabidopsis thaliana poly (A) binding protein 2 (PAB2) functions in yeast translational and mRNA decay processes. Plant Journal. 22: 187-98. Link to the article.

Patents:

3. Qin, Y., Palanivelu, R., Wysocki, R.Y., Somogyi, A., and Feinstein, Y. Pollen tube stimulants from Arabidopsis pistils. U.S. patent application filed in 2010 (12/732,938), published in 2011 (Publication Number: US 2011/0111959 A1), and a U.S. patent was awarded to the Board of Regents, University of Arizona (#: 8,389,728) on March 5, 2013.

2. Preuss, D., Palanivelu, R., Vigh, K., Cummings, M., and Bashir, M. Methods and compositions for diagnosis and immunotherapy of pollen allergy. U.S. (11/530,627), International (PCT/US2006/035123), Canadian, and European patent applications filed in 2006 and published in 2007 (Publication Numbers: US 2007-0183978 A1, WO2007/030748, CA 2621439, and EPO1922332 (A2) respectively).

1. Palanivelu, R., Brass, L. and. Preuss, D. Regulation of plant fertility by modulation of GABA levels in flowers. US patent application was filed in 2002 (#: 10/177,717), published in 2004 (Publication Number: 2004-0177398 A1), and awarded an U.S. Patent (#: 7,109,149) to The University of Chicago on September 19, 2006.